SRX3322024
GSM2825505: ChIP-seq from sigmoid colon (ENCLB123LEI); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
Colon, Sigmoid
MeSH Description
A segment of the COLON between the RECTUM and the descending colon.

Attributes by original data submitter

Sample

sex
male
tissue
sigmoid colon
lab
Michael Snyder, Stanford
sample_type
tissue
age
54 year
donor ID
ENCDO451RUA
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
119335729
Reads aligned (%)
96.8
Duplicates removed (%)
34.4
Number of peaks
22683 (qval < 1E-05)

hg19

Number of total reads
119335729
Reads aligned (%)
95.6
Duplicates removed (%)
34.9
Number of peaks
20567 (qval < 1E-05)

Base call quality data from DBCLS SRA